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genechip expression console v.1.4 software  (Thermo Fisher)


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    Structured Review

    Thermo Fisher genechip expression console v.1.4 software
    Genechip Expression Console V.1.4 Software, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genechip+expression+console+software/pm39820330-84-19-19
    Average 90 stars, based on 1 article reviews
    genechip expression console v.1.4 software - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Expressing:

    Article Title: Modification of Mesenchymal Stem Cells by HMGB1 Promotes the Activity of Cav3.2 T-type Calcium Channel via PKA/β-catenin/γ-cystathionase Pathway
    Article Snippet: Image signals were scanned by Affymetrix GeneChip Scanner 3000 and transformed to digital data by Affymetrix GeneChip Command Console software. .. The data les were transferred to the Affymetrix GeneChip Expression Console software for analysis of gene expression patterns. ..

    Article Title: Aging-Associated Changes in the Adult Human Skin Microbiome and the Host Factors that Affect Skin Microbiome Composition.
    Article Snippet: Purified RNA (25 ng) was converted to biotin-labeled GeneChip targets using the Affymetrix HT 30 IVT Express kit and protocol provided by Affymetrix (Santa Clara, CA). .. Targets were fragmented and hybridized to GeneTitan U219 array plates using the Affymetrix GeneTitan instrument, and chip images were converted to numeric data using the standard settings in the Affymetrix GeneChip Expression Console software. ..

    Article Title: Autophagy activators stimulate the removal of advanced glycation end products in human keratinocytes.
    Article Snippet: Biotinylated cRNA was fragmented by limited alkaline hydrolysis and then hybridized overnight to GeneTitan U219 array plates (Affymetrix) using the GeneTitan instrument and protocol provided. .. Following processing, chip images were converted to numeric data using the PLIER algorithm as executed in the Affymetrix GeneChip Expression Console software as now included in their TAC software. ..

    Article Title: A Bifunctional Synthetic Peptide With Antimicrobial and Plant Elicitation Properties That Protect Tomato Plants From Bacterial and Fungal Infections
    Article Snippet: Subsequently, chips were washed and fluorescence stained with phycoerythrin using the antibody amplification step described in the GeneChipTMFluidics Station 450 (Thermo Fisher Scientific), and fluorescence was quantified. .. After sample scanning, data were extracted, background-adjusted and normalized intensities of all probes were summarized into gene expression by the GeneChip Expression Console Software (Affymetrix, Thermo Fisher Scientific), using the Robust Multichip Average (RMA) algorithm (Irizarry et al., ). ..

    Article Title: DSCAM-AS1 Long Non-Coding RNA Exerts Oncogenic Functions in Endometrial Adenocarcinoma via Activation of a Tumor-Promoting Transcriptome Profile
    Article Snippet: Hybridized arrays were washed and stained in the Affymetrix Washing Station FS450 using Hyb, Wash & Stain Kit (Affymetrix), and the fluorescent signals were measured in the Affymetrix GeneChip ® Scanner 3000-7G. .. For data analysis, by means of the RMA algorithm in the Affymetrix GeneChip Expression Console Software, summarized probe signals were created. ..

    Article Title: Upregulated ethanolamine phospholipid synthesis via selenoprotein I is required for effective metabolic reprogramming during T cell activation
    Article Snippet: Subsequently, the arrays were washed, stained, and scanned using a GeneChip Fluidics Station 450 and GeneChip Scanner (Affymetrix). .. Generated CEL files were normalized using the SST-RMA-GENE-FULL algorithm in the Affymetrix GeneChip Expression console software. ..

    Article Title: The UPR Activator ATF6 Responds to Proteotoxic and Lipotoxic Stress by Distinct Mechanisms
    Article Snippet: .. Data was analyzed using Affymetrix Transcriptome Analysis Console (TAC) and GeneChip Expression Console Software (Affymetrix). ..

    Software:

    Article Title: Modification of Mesenchymal Stem Cells by HMGB1 Promotes the Activity of Cav3.2 T-type Calcium Channel via PKA/β-catenin/γ-cystathionase Pathway
    Article Snippet: Image signals were scanned by Affymetrix GeneChip Scanner 3000 and transformed to digital data by Affymetrix GeneChip Command Console software. .. The data les were transferred to the Affymetrix GeneChip Expression Console software for analysis of gene expression patterns. ..

    Article Title: Aging-Associated Changes in the Adult Human Skin Microbiome and the Host Factors that Affect Skin Microbiome Composition.
    Article Snippet: Purified RNA (25 ng) was converted to biotin-labeled GeneChip targets using the Affymetrix HT 30 IVT Express kit and protocol provided by Affymetrix (Santa Clara, CA). .. Targets were fragmented and hybridized to GeneTitan U219 array plates using the Affymetrix GeneTitan instrument, and chip images were converted to numeric data using the standard settings in the Affymetrix GeneChip Expression Console software. ..

    Article Title: Autophagy activators stimulate the removal of advanced glycation end products in human keratinocytes.
    Article Snippet: Biotinylated cRNA was fragmented by limited alkaline hydrolysis and then hybridized overnight to GeneTitan U219 array plates (Affymetrix) using the GeneTitan instrument and protocol provided. .. Following processing, chip images were converted to numeric data using the PLIER algorithm as executed in the Affymetrix GeneChip Expression Console software as now included in their TAC software. ..

    Article Title: A Bifunctional Synthetic Peptide With Antimicrobial and Plant Elicitation Properties That Protect Tomato Plants From Bacterial and Fungal Infections
    Article Snippet: Subsequently, chips were washed and fluorescence stained with phycoerythrin using the antibody amplification step described in the GeneChipTMFluidics Station 450 (Thermo Fisher Scientific), and fluorescence was quantified. .. After sample scanning, data were extracted, background-adjusted and normalized intensities of all probes were summarized into gene expression by the GeneChip Expression Console Software (Affymetrix, Thermo Fisher Scientific), using the Robust Multichip Average (RMA) algorithm (Irizarry et al., ). ..

    Article Title: DSCAM-AS1 Long Non-Coding RNA Exerts Oncogenic Functions in Endometrial Adenocarcinoma via Activation of a Tumor-Promoting Transcriptome Profile
    Article Snippet: Hybridized arrays were washed and stained in the Affymetrix Washing Station FS450 using Hyb, Wash & Stain Kit (Affymetrix), and the fluorescent signals were measured in the Affymetrix GeneChip ® Scanner 3000-7G. .. For data analysis, by means of the RMA algorithm in the Affymetrix GeneChip Expression Console Software, summarized probe signals were created. ..

    Article Title: Upregulated ethanolamine phospholipid synthesis via selenoprotein I is required for effective metabolic reprogramming during T cell activation
    Article Snippet: Subsequently, the arrays were washed, stained, and scanned using a GeneChip Fluidics Station 450 and GeneChip Scanner (Affymetrix). .. Generated CEL files were normalized using the SST-RMA-GENE-FULL algorithm in the Affymetrix GeneChip Expression console software. ..

    Article Title: The UPR Activator ATF6 Responds to Proteotoxic and Lipotoxic Stress by Distinct Mechanisms
    Article Snippet: .. Data was analyzed using Affymetrix Transcriptome Analysis Console (TAC) and GeneChip Expression Console Software (Affymetrix). ..

    Gene Expression:

    Article Title: Modification of Mesenchymal Stem Cells by HMGB1 Promotes the Activity of Cav3.2 T-type Calcium Channel via PKA/β-catenin/γ-cystathionase Pathway
    Article Snippet: Image signals were scanned by Affymetrix GeneChip Scanner 3000 and transformed to digital data by Affymetrix GeneChip Command Console software. .. The data les were transferred to the Affymetrix GeneChip Expression Console software for analysis of gene expression patterns. ..

    Article Title: A Bifunctional Synthetic Peptide With Antimicrobial and Plant Elicitation Properties That Protect Tomato Plants From Bacterial and Fungal Infections
    Article Snippet: Subsequently, chips were washed and fluorescence stained with phycoerythrin using the antibody amplification step described in the GeneChipTMFluidics Station 450 (Thermo Fisher Scientific), and fluorescence was quantified. .. After sample scanning, data were extracted, background-adjusted and normalized intensities of all probes were summarized into gene expression by the GeneChip Expression Console Software (Affymetrix, Thermo Fisher Scientific), using the Robust Multichip Average (RMA) algorithm (Irizarry et al., ). ..

    Hybridization:

    Article Title: Age-dependent alterations of Kir4.1 expression in neural crest-derived cells of the mouse and human cochlea
    Article Snippet: The total RNA quality was confirmed by Bioanalyzer and then samples were processed and hybridized to GeneChip Mouse 430 2.0 microarrays (Affymetrix, Santa Clara, CA) as previously described ( Lang et al., 2015 ; Panganiban et al., 2018 ). .. Resulting hybridization data were processed with GeneChip Expression Console software (Affymetrix) to derive RMA normalized expression intensities ( Irizarry et al., 2003 ) and MAS5 detection calls. ..

    Generated:

    Article Title: Upregulated ethanolamine phospholipid synthesis via selenoprotein I is required for effective metabolic reprogramming during T cell activation
    Article Snippet: Subsequently, the arrays were washed, stained, and scanned using a GeneChip Fluidics Station 450 and GeneChip Scanner (Affymetrix). .. Generated CEL files were normalized using the SST-RMA-GENE-FULL algorithm in the Affymetrix GeneChip Expression console software. ..



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    Image Search Results


    Networks of genes regulated upon silencing of DSCAM-AS1 in HEC-1B and RL95-2 cells as assessed by Affymetrix GeneChip and subsequent pathway analyses using Ingenuity Pathway Analysis (IPA) software (Qiagen Bioinformatics). Knockdown was less efficient in RL95-2 cells due to its positive ERα status (see Discussion section). The gene networks of upregulated genes (red) and downregulated genes (green) also indicate their key upstream regulators (yellow). Solid arrows: affecting gene expression.

    Journal: Biomedicines

    Article Title: DSCAM-AS1 Long Non-Coding RNA Exerts Oncogenic Functions in Endometrial Adenocarcinoma via Activation of a Tumor-Promoting Transcriptome Profile

    doi: 10.3390/biomedicines10071727

    Figure Lengend Snippet: Networks of genes regulated upon silencing of DSCAM-AS1 in HEC-1B and RL95-2 cells as assessed by Affymetrix GeneChip and subsequent pathway analyses using Ingenuity Pathway Analysis (IPA) software (Qiagen Bioinformatics). Knockdown was less efficient in RL95-2 cells due to its positive ERα status (see Discussion section). The gene networks of upregulated genes (red) and downregulated genes (green) also indicate their key upstream regulators (yellow). Solid arrows: affecting gene expression.

    Article Snippet: For data analysis, by means of the RMA algorithm in the Affymetrix GeneChip Expression Console Software, summarized probe signals were created.

    Techniques: Software, Expressing